文章摘要
昌晶,陈陆丹,徐燕,纪德华,陈昌生,谢潮添.高光胁迫下坛紫菜定量PCR内参基因的筛选[J].水产学报,2017,41(7):1064~1072
高光胁迫下坛紫菜定量PCR内参基因的筛选
Selection of the internal control gene for expression analyses of Pyropia haitanensis under high light stress by quantitative real-time PCR
投稿时间:2016-08-27  修订日期:2017-01-12
DOI:10.11964/jfc.20160810518
中文关键词: 坛紫菜  高光胁迫  内参基因  qRT-PCR
英文关键词: Pyropia haitanensis  high light stress  housekeeping genes  qRT-PCR
基金项目:国家“八六三”高技术研究发展计划(2012AA10A411);国家自然科学基金(41276177);福建省自然科学基金(2014J05041,2014J07006)
作者单位E-mail
昌晶 集美大学水产学院, 福建 厦门 361021  
陈陆丹 集美大学水产学院, 福建 厦门 361021  
徐燕 集美大学水产学院, 福建 厦门 361021  
纪德华 集美大学水产学院, 福建 厦门 361021  
陈昌生 集美大学水产学院, 福建 厦门 361021  
谢潮添 集美大学水产学院, 福建 厦门 361021 Ctxie@jmu.edu.cn 
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中文摘要:
      为了筛选不同高光光强胁迫下坛紫菜中表达水平最为稳定的内参基因,本研究采用qRT-PCR技术测定了植物中常用的6种内参基因UBCTUB、18SEF2、ACTGAPDH在不同光照强度下培养的坛紫菜藻体中的绝对表达水平,并采用比较Ct值法、GeNorm、Bestkeeper和NormFinder软件分析4种方法对6种候选内参基因的表达稳定性进行评估。结果显示,UBC的Ct值变化范围最小,18S的Ct值变化范围最大;geNorm软件分析结果显示最稳定的内参基因为UBCEF2;Bestkeeper和NormFinder软件分析结果类似,UBC基因的稳定值M均为最低值(分别为0.044和0.80),说明其表达水平最稳定。研究表明,UBC基因可以作为不同光照条件下坛紫菜基因表达qRT-PCR分析的最适内参基因。
英文摘要:
      Pyropia haitanensis is a sessile marine macroalgae that inhabits the intertidal zone. High light was the main environmental stressor of P. haitanensis during low tides and the key factor affecting yield. To explore the molecular mechanisms of high light tolerance, gene expression analysis was the first step. Gene expression studies using quantitative real-time PCR should start by selecting an appropriate internal control gene; therefore, the absolute expression levels of six housekeeping genes [18S rRNA (18S), ubiquitin-conjugating enzyme (UBC), actin (ACT), β-tubulin (TUB), elongation factors 2 (EF2), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH)] were examined by the quantitative real-time PCR in samples corresponding to different high light stress treatments. Their expression stabilities were assessed by the comparative cycle threshold (Ct) method and by three different software packages: geNorm, Bestkeeper and NormFinder. The results showed that the Ct value of UBC had the least variation, while that of 18S obviously changed under different light intensities treatments. The analysis of geNorm also exhibited that the most stable housekeeping genes were UBC and EF2. The analysis of both Bestkeeper and NormFinder exhibited that stability measure M of UBC was the lowest (0.044 and 0.80, respectively) among six candidate genes. Thus the most stable housekeeping gene is UBC. Based on the above results, it is proposed that the most appropriate internal control gene for expression analyses under high light stress of P. haitanensis is UBC.
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